J4_6VYQ_011

3D structure

PDB id

6VYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

6VYQ|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VYQ_011 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.061

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6VYQ|1|a|U|1313
6VYQ|1|a|C|1314
*
6VYQ|1|a|G|1338
6VYQ|1|a|G|1339
6VYQ|1|a|U|1340
6VYQ|1|a|G|1341
6VYQ|1|a|A|1342
6VYQ|1|a|G|1343
*
6VYQ|1|a|C|1404
6VYQ|1|a|U|1405
*
6VYQ|1|a|A|1597
6VYQ|1|a|A|1598
6VYQ|1|a|U|1599
6VYQ|1|a|C|1600
6VYQ|1|a|G|1601
6VYQ|1|a|U|1602
6VYQ|1|a|A|1603

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L23