J4_6VYQ_015

3D structure

PDB id

6VYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VYQ_015 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.0657

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6VYQ|1|a|G|2643
6VYQ|1|a|G|2644
6VYQ|1|a|G|2645
6VYQ|1|a|C|2646
*
6VYQ|1|a|G|2674
6VYQ|1|a|A|2675
6VYQ|1|a|C|2676
*
6VYQ|1|a|G|2731
6VYQ|1|a|G|2732
6VYQ|1|a|A|2733
6VYQ|1|a|A|2734
6VYQ|1|a|G|2735
*
6VYQ|1|a|U|2769
6VYQ|1|a|G|2770
6VYQ|1|a|C|2771

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain s

50S ribosomal protein L13

Chain t

50S ribosomal protein L14