J4_6VYR_003

3D structure

PDB id

6VYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6VYR|1|D|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VYR_003 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1124

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6VYR|1|D|G|115
6VYR|1|D|A|116
6VYR|1|D|G|117
6VYR|1|D|U|118
6VYR|1|D|A|119
6VYR|1|D|A|120
6VYR|1|D|U|121
6VYR|1|D|G|122
*
6VYR|1|D|U|239
6VYR|1|D|G|240
*
6VYR|1|D|C|286
6VYR|1|D|U|287
6VYR|1|D|A|288
6VYR|1|D|G|289
*
6VYR|1|D|C|311
6VYR|1|D|C|312

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12

Chain U

30S ribosomal protein S16

Chain V

30S ribosomal protein S17