J4_6VYS_004

3D structure

PDB id

6VYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

6VYS|1|D|C|183, 6VYS|1|D|A|197

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VYS_004 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0896

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6VYS|1|D|G|142
6VYS|1|D|A|143
6VYS|1|D|G|144
*
6VYS|1|D|C|178
6VYS|1|D|A|179
6VYS|1|D|U|180
6VYS|1|D|A|181
6VYS|1|D|A|182
6VYS|1|D|C|183
6VYS|1|D|G|184
*
6VYS|1|D|C|193
6VYS|1|D|C|194
6VYS|1|D|A|195
6VYS|1|D|A|196
6VYS|1|D|A|197
6VYS|1|D|G|198
*
6VYS|1|D|U|219
6VYS|1|D|G|220
6VYS|1|D|C|221

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20