J4_6VYS_006

3D structure

PDB id

6VYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6VYS|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VYS_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0999

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6VYS|1|a|C|268
6VYS|1|a|C|269
*
6VYS|1|a|G|370
6VYS|1|a|A|371
6VYS|1|a|G|372
6VYS|1|a|U|373
6VYS|1|a|A|374
6VYS|1|a|G|375
*
6VYS|1|a|U|399
6VYS|1|a|G|400
6VYS|1|a|A|401
6VYS|1|a|A|402
6VYS|1|a|U|403
6VYS|1|a|A|404
6VYS|1|a|U|405
6VYS|1|a|G|406
*
6VYS|1|a|C|421
6VYS|1|a|A|422
6VYS|1|a|A|423
6VYS|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain r

50S ribosomal protein L9