J4_6VYU_008

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

6VYU|1|a|U|653, 6VYU|1|a|A|654

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VYU_008 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.179

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

6VYU|1|a|C|601
6VYU|1|a|A|602
6VYU|1|a|A|603
6VYU|1|a|G|604
*
6VYU|1|a|C|624
6VYU|1|a|G|625
6VYU|1|a|A|626
6VYU|1|a|A|627
6VYU|1|a|G|628
*
6VYU|1|a|C|635
6VYU|1|a|G|636
6VYU|1|a|A|637
6VYU|1|a|G|638
*
6VYU|1|a|C|650
6VYU|1|a|G|651
6VYU|1|a|U|652
6VYU|1|a|U|653
6VYU|1|a|A|654
6VYU|1|a|A|655
6VYU|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L4

Chain o

50S ribosomal protein L35

Chain u

50S ribosomal protein L15