J4_6VYU_010

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6VYU|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VYU_010 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0704

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6VYU|1|a|G|1310
6VYU|1|a|G|1311
6VYU|1|a|U|1312
6VYU|1|a|U|1313
6VYU|1|a|C|1314
*
6VYU|1|a|G|1338
6VYU|1|a|G|1339
6VYU|1|a|U|1340
6VYU|1|a|G|1341
6VYU|1|a|A|1342
6VYU|1|a|G|1343
*
6VYU|1|a|C|1404
6VYU|1|a|U|1405
*
6VYU|1|a|A|1597
6VYU|1|a|A|1598
6VYU|1|a|U|1599
6VYU|1|a|C|1600
6VYU|1|a|G|1601
6VYU|1|a|U|1602
6VYU|1|a|A|1603
6VYU|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L23

Chain m

50S ribosomal protein L34