3D structure

PDB id
6VYW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
7 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
6VYW|1|D|C|576, 6VYW|1|D|A|815, 6VYW|1|D|C|817, 6VYW|1|D|A|819
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6VYW_005 not in the Motif Atlas
Homologous match to J4_5J7L_003
Geometric discrepancy: 0.0577
The information below is about J4_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

6VYW|1|D|G|575
6VYW|1|D|C|576
6VYW|1|D|G|577
*
6VYW|1|D|C|764
6VYW|1|D|G|765
6VYW|1|D|A|766
6VYW|1|D|A|767
6VYW|1|D|A|768
6VYW|1|D|G|769
*
6VYW|1|D|C|810
6VYW|1|D|C|811
6VYW|1|D|G|812
6VYW|1|D|U|813
6VYW|1|D|A|814
6VYW|1|D|A|815
6VYW|1|D|A|816
6VYW|1|D|C|817
6VYW|1|D|G|818
6VYW|1|D|A|819
6VYW|1|D|U|820
6VYW|1|D|G|821
*
6VYW|1|D|C|879
6VYW|1|D|C|880

Current chains

Chain D
16S rRNA

Nearby chains

Chain N
30S ribosomal protein S8
Chain R
30S ribosomal protein S12
Chain T
30S ribosomal protein S15
Chain V
30S ribosomal protein S17

Coloring options:


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