J4_6VZ2_004

3D structure

PDB id

6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

6VZ2|1|D|C|183, 6VZ2|1|D|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VZ2_004 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0896

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6VZ2|1|D|G|142
6VZ2|1|D|A|143
6VZ2|1|D|G|144
*
6VZ2|1|D|C|178
6VZ2|1|D|A|179
6VZ2|1|D|U|180
6VZ2|1|D|A|181
6VZ2|1|D|A|182
6VZ2|1|D|C|183
6VZ2|1|D|G|184
*
6VZ2|1|D|C|193
6VZ2|1|D|C|194
6VZ2|1|D|A|195
6VZ2|1|D|A|196
6VZ2|1|D|A|197
6VZ2|1|D|G|198
*
6VZ2|1|D|U|219
6VZ2|1|D|G|220
6VZ2|1|D|C|221

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20