J4_6VZ2_006

3D structure

PDB id

6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6VZ2|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VZ2_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6VZ2|1|a|C|268
6VZ2|1|a|C|269
*
6VZ2|1|a|G|370
6VZ2|1|a|A|371
6VZ2|1|a|G|372
6VZ2|1|a|U|373
6VZ2|1|a|A|374
6VZ2|1|a|G|375
*
6VZ2|1|a|U|399
6VZ2|1|a|G|400
6VZ2|1|a|A|401
6VZ2|1|a|A|402
6VZ2|1|a|U|403
6VZ2|1|a|A|404
6VZ2|1|a|U|405
6VZ2|1|a|G|406
*
6VZ2|1|a|C|421
6VZ2|1|a|A|422
6VZ2|1|a|A|423
6VZ2|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain r

50S ribosomal protein L9