J4_6VZ2_009

3D structure

PDB id

6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

6VZ2|1|a|G|1271, 6VZ2|1|a|A|1272, 6VZ2|1|a|U|1273, 6VZ2|1|a|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VZ2_009 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0572

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6VZ2|1|a|C|1270
6VZ2|1|a|G|1271
6VZ2|1|a|A|1272
6VZ2|1|a|U|1273
6VZ2|1|a|A|1274
6VZ2|1|a|A|1275
6VZ2|1|a|A|1276
*
6VZ2|1|a|U|1294
6VZ2|1|a|C|1295
*
6VZ2|1|a|G|1645
6VZ2|1|a|C|1646
6VZ2|1|a|U|1647
6VZ2|1|a|U|1648
*
6VZ2|1|a|A|2009
6VZ2|1|a|G|2010

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain i

50S ribosomal protein L32

Chain w

50S ribosomal protein L17