3D structure

PDB id
6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
8.9 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
6VZ3|1|D|C|576, 6VZ3|1|D|A|815, 6VZ3|1|D|C|817, 6VZ3|1|D|A|819
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6VZ3_005 not in the Motif Atlas
Homologous match to J4_5J7L_003
Geometric discrepancy: 0.0577
The information below is about J4_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

6VZ3|1|D|G|575
6VZ3|1|D|C|576
6VZ3|1|D|G|577
*
6VZ3|1|D|C|764
6VZ3|1|D|G|765
6VZ3|1|D|A|766
6VZ3|1|D|A|767
6VZ3|1|D|A|768
6VZ3|1|D|G|769
*
6VZ3|1|D|C|810
6VZ3|1|D|C|811
6VZ3|1|D|G|812
6VZ3|1|D|U|813
6VZ3|1|D|A|814
6VZ3|1|D|A|815
6VZ3|1|D|A|816
6VZ3|1|D|C|817
6VZ3|1|D|G|818
6VZ3|1|D|A|819
6VZ3|1|D|U|820
6VZ3|1|D|G|821
*
6VZ3|1|D|C|879
6VZ3|1|D|C|880

Current chains

Chain D
16S rRNA

Nearby chains

Chain N
30S ribosomal protein S8
Chain R
30S ribosomal protein S12
Chain T
30S ribosomal protein S15
Chain V
30S ribosomal protein S17

Coloring options:


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