J4_6VZ5_008
3D structure
- PDB id
- 6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 6VZ5|1|a|U|653, 6VZ5|1|a|A|654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6VZ5_008 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.1791
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6VZ5|1|a|C|601
6VZ5|1|a|A|602
6VZ5|1|a|A|603
6VZ5|1|a|G|604
*
6VZ5|1|a|C|624
6VZ5|1|a|G|625
6VZ5|1|a|A|626
6VZ5|1|a|A|627
6VZ5|1|a|G|628
*
6VZ5|1|a|C|635
6VZ5|1|a|G|636
6VZ5|1|a|A|637
6VZ5|1|a|G|638
*
6VZ5|1|a|C|650
6VZ5|1|a|G|651
6VZ5|1|a|U|652
6VZ5|1|a|U|653
6VZ5|1|a|A|654
6VZ5|1|a|A|655
6VZ5|1|a|G|656
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain l
- 50S ribosomal protein L4
- Chain o
- 50S ribosomal protein L35
- Chain u
- 50S ribosomal protein L15
Coloring options: