J4_6VZ7_007
3D structure
- PDB id
- 6VZ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex C1 (TTC-C1) containing a 27 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- GGAAG*CGCG*CAG*CGUAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6VZ7_007 not in the Motif Atlas
- Homologous match to J4_5J7L_019
- Geometric discrepancy: 0.0512
- The information below is about J4_5J7L_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_71729.5
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6VZ7|1|a|G|297
6VZ7|1|a|G|298
6VZ7|1|a|A|299
6VZ7|1|a|A|300
6VZ7|1|a|G|301
*
6VZ7|1|a|C|316
6VZ7|1|a|G|317
6VZ7|1|a|C|318
6VZ7|1|a|G|319
*
6VZ7|1|a|C|323
6VZ7|1|a|A|324
6VZ7|1|a|G|325
*
6VZ7|1|a|C|337
6VZ7|1|a|G|338
6VZ7|1|a|U|339
6VZ7|1|a|A|340
6VZ7|1|a|C|341
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L24
- Chain l
- 50S ribosomal protein L4
Coloring options: