J4_6VZJ_003

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6VZJ|1|D|U|121

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VZJ_003 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1124

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6VZJ|1|D|G|115
6VZJ|1|D|A|116
6VZJ|1|D|G|117
6VZJ|1|D|U|118
6VZJ|1|D|A|119
6VZJ|1|D|A|120
6VZJ|1|D|U|121
6VZJ|1|D|G|122
*
6VZJ|1|D|U|239
6VZJ|1|D|G|240
*
6VZJ|1|D|C|286
6VZJ|1|D|U|287
6VZJ|1|D|A|288
6VZJ|1|D|G|289
*
6VZJ|1|D|C|311
6VZJ|1|D|C|312

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12

Chain U

30S ribosomal protein S16

Chain V

30S ribosomal protein S17