J4_6VZJ_004

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

6VZJ|1|D|C|183, 6VZJ|1|D|A|197

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VZJ_004 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0896

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6VZJ|1|D|G|142
6VZJ|1|D|A|143
6VZJ|1|D|G|144
*
6VZJ|1|D|C|178
6VZJ|1|D|A|179
6VZJ|1|D|U|180
6VZJ|1|D|A|181
6VZJ|1|D|A|182
6VZJ|1|D|C|183
6VZJ|1|D|G|184
*
6VZJ|1|D|C|193
6VZJ|1|D|C|194
6VZJ|1|D|A|195
6VZJ|1|D|A|196
6VZJ|1|D|A|197
6VZJ|1|D|G|198
*
6VZJ|1|D|U|219
6VZJ|1|D|G|220
6VZJ|1|D|C|221

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20