J4_6VZJ_006

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6VZJ|1|a|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VZJ_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6VZJ|1|a|C|268
6VZJ|1|a|C|269
*
6VZJ|1|a|G|370
6VZJ|1|a|A|371
6VZJ|1|a|G|372
6VZJ|1|a|U|373
6VZJ|1|a|A|374
6VZJ|1|a|G|375
*
6VZJ|1|a|U|399
6VZJ|1|a|G|400
6VZJ|1|a|A|401
6VZJ|1|a|A|402
6VZJ|1|a|U|403
6VZJ|1|a|A|404
6VZJ|1|a|U|405
6VZJ|1|a|G|406
*
6VZJ|1|a|C|421
6VZJ|1|a|A|422
6VZJ|1|a|A|423
6VZJ|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain r

50S ribosomal protein L9