J4_6W2S_002
3D structure
- PDB id
- 6W2S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 6W2S|1|A|A|1083, 6W2S|1|A|C|1085, 6W2S|1|A|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6W2S_002 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.0936
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6W2S|1|A|A|671
6W2S|1|A|A|672
6W2S|1|A|G|673
*
6W2S|1|A|C|1032
6W2S|1|A|G|1033
6W2S|1|A|A|1034
6W2S|1|A|A|1035
6W2S|1|A|A|1036
6W2S|1|A|G|1037
*
6W2S|1|A|C|1078
6W2S|1|A|C|1079
6W2S|1|A|A|1080
6W2S|1|A|U|1081
6W2S|1|A|A|1082
6W2S|1|A|A|1083
6W2S|1|A|A|1084
6W2S|1|A|C|1085
6W2S|1|A|G|1086
6W2S|1|A|A|1087
6W2S|1|A|U|1088
6W2S|1|A|G|1089
*
6W2S|1|A|U|1160
6W2S|1|A|U|1161
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain M
- uS17
- Chain O
- uS15
- Chain P
- uS11
- Chain X
- uS8
- Chain Y
- uS12
- Chain b
- eS26
Coloring options: