J4_6W2T_001
3D structure
- PDB id
- 6W2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.36 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUGAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 6W2T|1|a|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6W2T_001 not in the Motif Atlas
- Homologous match to J4_8C3A_021
- Geometric discrepancy: 0.1722
- The information below is about J4_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78231.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6W2T|1|a|C|98
6W2T|1|a|A|99
6W2T|1|a|U|100
6W2T|1|a|U|101
6W2T|1|a|A|102
6W2T|1|a|A|103
6W2T|1|a|A|104
6W2T|1|a|U|105
6W2T|1|a|C|106
*
6W2T|1|a|G|355
6W2T|1|a|C|356
6W2T|1|a|C|357
*
6W2T|1|a|G|405
6W2T|1|a|U|406
6W2T|1|a|G|407
6W2T|1|a|A|408
6W2T|1|a|C|409
*
6W2T|1|a|G|431
6W2T|1|a|G|432
Current chains
- Chain a
- 18S rRNA
Nearby chains
- Chain F
- eS4
- Chain J
- eS8
- Chain M
- uS17
- Chain Y
- uS12
Coloring options: