J4_6W6P_002

3D structure

PDB id

6W6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

MultiBody Refinement of 70S Ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAG*CGCU*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6W6P_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1232

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6W6P|1|A|U|334
6W6P|1|A|G|335
6W6P|1|A|A|336
6W6P|1|A|A|337
6W6P|1|A|G|338
*
6W6P|1|A|C|353
6W6P|1|A|G|354
6W6P|1|A|C|355
6W6P|1|A|U|356
*
6W6P|1|A|G|360
6W6P|1|A|A|361
6W6P|1|A|G|362
*
6W6P|1|A|C|374
6W6P|1|A|G|375
6W6P|1|A|U|376
6W6P|1|A|A|377
6W6P|1|A|G|378

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24