J4_6W6P_004
3D structure
- PDB id
- 6W6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MultiBody Refinement of 70S Ribosome from Enterococcus faecalis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAAG*CC*GAGC*GG
- Length
- 14 nucleotides
- Bulged bases
- 6W6P|1|A|G|1308, 6W6P|1|A|A|1309, 6W6P|1|A|G|1690
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6W6P_004 not in the Motif Atlas
- Homologous match to J4_4WF9_004
- Geometric discrepancy: 0.13
- The information below is about J4_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.6
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6W6P|1|A|C|1307
6W6P|1|A|G|1308
6W6P|1|A|A|1309
6W6P|1|A|A|1310
6W6P|1|A|A|1311
6W6P|1|A|G|1312
*
6W6P|1|A|C|1330
6W6P|1|A|C|1331
*
6W6P|1|A|G|1688
6W6P|1|A|A|1689
6W6P|1|A|G|1690
6W6P|1|A|C|1691
*
6W6P|1|A|G|2023
6W6P|1|A|G|2024
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L32
- Chain O
- 50S ribosomal protein L17
- Chain T
- 50S ribosomal protein L22
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