J4_6W7M_001

3D structure

PDB id

6W7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Inactive-high-Mg2+ + carbon layer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6W7M|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6W7M_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2805

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6W7M|1|A|G|115
6W7M|1|A|A|116
6W7M|1|A|G|117
6W7M|1|A|U|118
6W7M|1|A|A|119
6W7M|1|A|A|120
6W7M|1|A|U|121
6W7M|1|A|G|122
*
6W7M|1|A|U|239
6W7M|1|A|G|240
*
6W7M|1|A|C|286
6W7M|1|A|U|287
6W7M|1|A|A|288
6W7M|1|A|G|289
*
6W7M|1|A|C|311
6W7M|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17