J4_6WD1_001

3D structure

PDB id

6WD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6WD1|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WD1_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1605

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6WD1|1|1|C|268
6WD1|1|1|C|269
*
6WD1|1|1|G|370
6WD1|1|1|A|371
6WD1|1|1|G|372
6WD1|1|1|U|373
6WD1|1|1|A|374
6WD1|1|1|G|375
*
6WD1|1|1|U|399
6WD1|1|1|G|400
6WD1|1|1|A|401
6WD1|1|1|A|402
6WD1|1|1|U|403
6WD1|1|1|A|404
6WD1|1|1|U|405
6WD1|1|1|G|406
*
6WD1|1|1|C|421
6WD1|1|1|A|422
6WD1|1|1|A|423
6WD1|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28