3D structure

PDB id
6WD7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GAGUAAUG*UG*CUAG*CC
Length
16 nucleotides
Bulged bases
6WD7|1|3|U|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6WD7_011 not in the Motif Atlas
Homologous match to J4_5J7L_001
Geometric discrepancy: 0.294
The information below is about J4_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

6WD7|1|3|G|115
6WD7|1|3|A|116
6WD7|1|3|G|117
6WD7|1|3|U|118
6WD7|1|3|A|119
6WD7|1|3|A|120
6WD7|1|3|U|121
6WD7|1|3|G|122
*
6WD7|1|3|U|239
6WD7|1|3|G|240
*
6WD7|1|3|C|286
6WD7|1|3|U|287
6WD7|1|3|A|288
6WD7|1|3|G|289
*
6WD7|1|3|C|311
6WD7|1|3|C|312

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain Q
30S ribosomal protein S12
Chain U
30S ribosomal protein S16
Chain V
30S ribosomal protein S17

Coloring options:


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