J4_6WD7_011

3D structure

PDB id

6WD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6WD7|1|3|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WD7_011 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.294

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6WD7|1|3|G|115
6WD7|1|3|A|116
6WD7|1|3|G|117
6WD7|1|3|U|118
6WD7|1|3|A|119
6WD7|1|3|A|120
6WD7|1|3|U|121
6WD7|1|3|G|122
*
6WD7|1|3|U|239
6WD7|1|3|G|240
*
6WD7|1|3|C|286
6WD7|1|3|U|287
6WD7|1|3|A|288
6WD7|1|3|G|289
*
6WD7|1|3|C|311
6WD7|1|3|C|312

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain Q

30S ribosomal protein S12

Chain U

30S ribosomal protein S16

Chain V

30S ribosomal protein S17