J4_6WD8_001

3D structure

PDB id

6WD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6WD8|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WD8_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1947

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6WD8|1|1|C|268
6WD8|1|1|C|269
*
6WD8|1|1|G|370
6WD8|1|1|A|371
6WD8|1|1|G|372
6WD8|1|1|U|373
6WD8|1|1|A|374
6WD8|1|1|G|375
*
6WD8|1|1|U|399
6WD8|1|1|G|400
6WD8|1|1|A|401
6WD8|1|1|A|402
6WD8|1|1|U|403
6WD8|1|1|A|404
6WD8|1|1|U|405
6WD8|1|1|G|406
*
6WD8|1|1|C|421
6WD8|1|1|A|422
6WD8|1|1|A|423
6WD8|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28