J4_6WD9_001

3D structure

PDB id

6WD9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6WD9|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WD9_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1823

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6WD9|1|1|C|268
6WD9|1|1|C|269
*
6WD9|1|1|G|370
6WD9|1|1|A|371
6WD9|1|1|G|372
6WD9|1|1|U|373
6WD9|1|1|A|374
6WD9|1|1|G|375
*
6WD9|1|1|U|399
6WD9|1|1|G|400
6WD9|1|1|A|401
6WD9|1|1|A|402
6WD9|1|1|U|403
6WD9|1|1|A|404
6WD9|1|1|U|405
6WD9|1|1|G|406
*
6WD9|1|1|C|421
6WD9|1|1|A|422
6WD9|1|1|A|423
6WD9|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28