J4_6WD9_007

3D structure

PDB id

6WD9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WD9_007 not in the Motif Atlas

Homologous match to J4_4WF9_007

Geometric discrepancy: 0.0983

The information below is about J4_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6WD9|1|1|A|1772
6WD9|1|1|A|1773
6WD9|1|1|C|1774
6WD9|1|1|U|1775
6WD9|1|1|G|1776
*
6WD9|1|1|C|1788
6WD9|1|1|A|1789
6WD9|1|1|C|1790
6WD9|1|1|A|1791
6WD9|1|1|G|1792
*
6WD9|1|1|U|1827
6WD9|1|1|G|1828
6WD9|1|1|A|1829
6WD9|1|1|C|1830
*
6WD9|1|1|G|1975
6WD9|1|1|U|1976
6WD9|1|1|A|1977
6WD9|1|1|A|1978
6WD9|1|1|U|1979

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2