J4_6WDA_017
3D structure
- PDB id
- 6WDA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 6WDA|1|7|U|8, 6WDA|1|7|U|47, 6WDA|1|7|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6WDA_017 not in the Motif Atlas
- Homologous match to J4_5WT1_002
- Geometric discrepancy: 0.2803
- The information below is about J4_5WT1_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_40477.1
- Basepair signature
- cWW-F-cWW-F-cWW-cHW-F-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6WDA|1|7|A|7
6WDA|1|7|U|8
6WDA|1|7|A|9
6WDA|1|7|G|10
*
6WDA|1|7|C|25
6WDA|1|7|A|26
6WDA|1|7|G|27
*
6WDA|1|7|C|43
6WDA|1|7|G|44
6WDA|1|7|U|45
6WDA|1|7|G|46
6WDA|1|7|U|47
6WDA|1|7|C|48
6WDA|1|7|C|49
*
6WDA|1|7|G|65
6WDA|1|7|U|66
Current chains
- Chain 7
- tRNAPhe
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain 8
- Elongation factor Tu
- Chain Q
- 30S ribosomal protein S12
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