J4_6WDC_012

3D structure

PDB id

6WDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAG*CAUAACG*CCAAAGA*UUGC

Length

21 nucleotides

Bulged bases

6WDC|1|3|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDC|1|3|G|142
6WDC|1|3|A|143
6WDC|1|3|G|144
*
6WDC|1|3|C|178
6WDC|1|3|A|179
6WDC|1|3|U|180
6WDC|1|3|A|181
6WDC|1|3|A|182
6WDC|1|3|C|183
6WDC|1|3|G|184
*
6WDC|1|3|C|193
6WDC|1|3|C|194
6WDC|1|3|A|195
6WDC|1|3|A|196
6WDC|1|3|A|197
6WDC|1|3|G|198
6WDC|1|3|A|199
*
6WDC|1|3|U|218
6WDC|1|3|U|219
6WDC|1|3|G|220
6WDC|1|3|C|221

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain Y

30S ribosomal protein S20