J4_6WDE_001

3D structure

PDB id

6WDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6WDE|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WDE_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1575

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6WDE|1|1|C|268
6WDE|1|1|C|269
*
6WDE|1|1|G|370
6WDE|1|1|A|371
6WDE|1|1|G|372
6WDE|1|1|U|373
6WDE|1|1|A|374
6WDE|1|1|G|375
*
6WDE|1|1|U|399
6WDE|1|1|G|400
6WDE|1|1|A|401
6WDE|1|1|A|402
6WDE|1|1|U|403
6WDE|1|1|A|404
6WDE|1|1|U|405
6WDE|1|1|G|406
*
6WDE|1|1|C|421
6WDE|1|1|A|422
6WDE|1|1|A|423
6WDE|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28