J4_6WDF_001

3D structure

PDB id

6WDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6WDF|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WDF_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1754

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6WDF|1|1|C|268
6WDF|1|1|C|269
*
6WDF|1|1|G|370
6WDF|1|1|A|371
6WDF|1|1|G|372
6WDF|1|1|U|373
6WDF|1|1|A|374
6WDF|1|1|G|375
*
6WDF|1|1|U|399
6WDF|1|1|G|400
6WDF|1|1|A|401
6WDF|1|1|A|402
6WDF|1|1|U|403
6WDF|1|1|A|404
6WDF|1|1|U|405
6WDF|1|1|G|406
*
6WDF|1|1|C|421
6WDF|1|1|A|422
6WDF|1|1|A|423
6WDF|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28