J4_6WDG_001

3D structure

PDB id

6WDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6WDG|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WDG_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1619

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6WDG|1|1|C|268
6WDG|1|1|C|269
*
6WDG|1|1|G|370
6WDG|1|1|A|371
6WDG|1|1|G|372
6WDG|1|1|U|373
6WDG|1|1|A|374
6WDG|1|1|G|375
*
6WDG|1|1|U|399
6WDG|1|1|G|400
6WDG|1|1|A|401
6WDG|1|1|A|402
6WDG|1|1|U|403
6WDG|1|1|A|404
6WDG|1|1|U|405
6WDG|1|1|G|406
*
6WDG|1|1|C|421
6WDG|1|1|A|422
6WDG|1|1|A|423
6WDG|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28