3D structure

PDB id
6WDG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GAGUAAUG*UG*CUAG*CC
Length
16 nucleotides
Bulged bases
6WDG|1|3|U|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6WDG_011 not in the Motif Atlas
Homologous match to J4_5J7L_001
Geometric discrepancy: 0.2838
The information below is about J4_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

6WDG|1|3|G|115
6WDG|1|3|A|116
6WDG|1|3|G|117
6WDG|1|3|U|118
6WDG|1|3|A|119
6WDG|1|3|A|120
6WDG|1|3|U|121
6WDG|1|3|G|122
*
6WDG|1|3|U|239
6WDG|1|3|G|240
*
6WDG|1|3|C|286
6WDG|1|3|U|287
6WDG|1|3|A|288
6WDG|1|3|G|289
*
6WDG|1|3|C|311
6WDG|1|3|C|312

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain U
30S ribosomal protein S16
Chain V
30S ribosomal protein S17

Coloring options:


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