J4_6WDH_012

3D structure

PDB id

6WDH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GAG*CAUAACG*CCAAAGA*UUGC

Length

21 nucleotides

Bulged bases

6WDH|1|3|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDH|1|3|G|142
6WDH|1|3|A|143
6WDH|1|3|G|144
*
6WDH|1|3|C|178
6WDH|1|3|A|179
6WDH|1|3|U|180
6WDH|1|3|A|181
6WDH|1|3|A|182
6WDH|1|3|C|183
6WDH|1|3|G|184
*
6WDH|1|3|C|193
6WDH|1|3|C|194
6WDH|1|3|A|195
6WDH|1|3|A|196
6WDH|1|3|A|197
6WDH|1|3|G|198
6WDH|1|3|A|199
*
6WDH|1|3|U|218
6WDH|1|3|U|219
6WDH|1|3|G|220
6WDH|1|3|C|221

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain Y

30S ribosomal protein S20