J4_6WDH_014
3D structure
- PDB id
- 6WDH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 6WDH|1|5|U|8, 6WDH|1|5|U|47, 6WDH|1|5|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6WDH_014 not in the Motif Atlas
- Homologous match to J4_7K98_001
- Geometric discrepancy: 0.2294
- The information below is about J4_7K98_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
6WDH|1|5|G|7
6WDH|1|5|U|8
6WDH|1|5|G|9
6WDH|1|5|G|10
*
6WDH|1|5|C|25
6WDH|1|5|G|26
6WDH|1|5|U|27
*
6WDH|1|5|A|43
6WDH|1|5|A|44
6WDH|1|5|G|45
6WDH|1|5|G|46
6WDH|1|5|U|47
6WDH|1|5|C|48
6WDH|1|5|G|49
*
6WDH|1|5|C|65
6WDH|1|5|C|66
Current chains
- Chain 5
- tRNAfMet
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain R
- 30S ribosomal protein S13
- Chain m
- 50S ribosomal protein L16
- Chain w
- 50S ribosomal protein L27
Coloring options: