J4_6WDI_004

3D structure

PDB id

6WDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6WDI|1|1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WDI_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1284

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6WDI|1|1|G|1310
6WDI|1|1|G|1311
6WDI|1|1|U|1312
6WDI|1|1|U|1313
6WDI|1|1|C|1314
*
6WDI|1|1|G|1338
6WDI|1|1|G|1339
6WDI|1|1|U|1340
6WDI|1|1|G|1341
6WDI|1|1|A|1342
6WDI|1|1|G|1343
*
6WDI|1|1|C|1404
6WDI|1|1|U|1405
*
6WDI|1|1|A|1597
6WDI|1|1|A|1598
6WDI|1|1|U|1599
6WDI|1|1|C|1600
6WDI|1|1|G|1601
6WDI|1|1|U|1602
6WDI|1|1|A|1603
6WDI|1|1|C|1604

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain t

50S ribosomal protein L23