J4_6WDJ_007
3D structure
- PDB id
- 6WDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AACUG*CACAG*UGAC*GUAAU
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6WDJ_007 not in the Motif Atlas
- Homologous match to J4_4WF9_007
- Geometric discrepancy: 0.1073
- The information below is about J4_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.5
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6WDJ|1|1|A|1772
6WDJ|1|1|A|1773
6WDJ|1|1|C|1774
6WDJ|1|1|U|1775
6WDJ|1|1|G|1776
*
6WDJ|1|1|C|1788
6WDJ|1|1|A|1789
6WDJ|1|1|C|1790
6WDJ|1|1|A|1791
6WDJ|1|1|G|1792
*
6WDJ|1|1|U|1827
6WDJ|1|1|G|1828
6WDJ|1|1|A|1829
6WDJ|1|1|C|1830
*
6WDJ|1|1|G|1975
6WDJ|1|1|U|1976
6WDJ|1|1|A|1977
6WDJ|1|1|A|1978
6WDJ|1|1|U|1979
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain b
- 50S ribosomal protein L2
Coloring options: