3D structure

PDB id
6WDJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
AACUG*CACAG*UGAC*GUAAU
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6WDJ_007 not in the Motif Atlas
Homologous match to J4_4WF9_007
Geometric discrepancy: 0.1073
The information below is about J4_4WF9_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61477.5
Basepair signature
cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Number of instances in this motif group
4

Unit IDs

6WDJ|1|1|A|1772
6WDJ|1|1|A|1773
6WDJ|1|1|C|1774
6WDJ|1|1|U|1775
6WDJ|1|1|G|1776
*
6WDJ|1|1|C|1788
6WDJ|1|1|A|1789
6WDJ|1|1|C|1790
6WDJ|1|1|A|1791
6WDJ|1|1|G|1792
*
6WDJ|1|1|U|1827
6WDJ|1|1|G|1828
6WDJ|1|1|A|1829
6WDJ|1|1|C|1830
*
6WDJ|1|1|G|1975
6WDJ|1|1|U|1976
6WDJ|1|1|A|1977
6WDJ|1|1|A|1978
6WDJ|1|1|U|1979

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 3
Small subunit ribosomal RNA; SSU rRNA
Chain b
50S ribosomal protein L2

Coloring options:


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