J4_6WDJ_012
3D structure
- PDB id
- 6WDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAG*CAUAACG*CCAAAG*UGC
- Length
- 19 nucleotides
- Bulged bases
- 6WDJ|1|3|C|183, 6WDJ|1|3|A|197
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6WDJ_012 not in the Motif Atlas
- Homologous match to J4_5J7L_002
- Geometric discrepancy: 0.1656
- The information below is about J4_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_01665.1
- Basepair signature
- cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6WDJ|1|3|G|142
6WDJ|1|3|A|143
6WDJ|1|3|G|144
*
6WDJ|1|3|C|178
6WDJ|1|3|A|179
6WDJ|1|3|U|180
6WDJ|1|3|A|181
6WDJ|1|3|A|182
6WDJ|1|3|C|183
6WDJ|1|3|G|184
*
6WDJ|1|3|C|193
6WDJ|1|3|C|194
6WDJ|1|3|A|195
6WDJ|1|3|A|196
6WDJ|1|3|A|197
6WDJ|1|3|G|198
*
6WDJ|1|3|U|219
6WDJ|1|3|G|220
6WDJ|1|3|C|221
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain Y
- 30S ribosomal protein S20
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