J4_6WDK_001

3D structure

PDB id

6WDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6WDK|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WDK_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2007

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6WDK|1|1|C|268
6WDK|1|1|C|269
*
6WDK|1|1|G|370
6WDK|1|1|A|371
6WDK|1|1|G|372
6WDK|1|1|U|373
6WDK|1|1|A|374
6WDK|1|1|G|375
*
6WDK|1|1|U|399
6WDK|1|1|G|400
6WDK|1|1|A|401
6WDK|1|1|A|402
6WDK|1|1|U|403
6WDK|1|1|A|404
6WDK|1|1|U|405
6WDK|1|1|G|406
*
6WDK|1|1|C|421
6WDK|1|1|A|422
6WDK|1|1|A|423
6WDK|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28