J4_6WDK_014
3D structure
- PDB id
- 6WDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 6WDK|1|5|U|8, 6WDK|1|5|U|47, 6WDK|1|5|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6WDK_014 not in the Motif Atlas
- Homologous match to J4_4WT8_034
- Geometric discrepancy: 0.1582
- The information below is about J4_4WT8_034
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
6WDK|1|5|G|7
6WDK|1|5|U|8
6WDK|1|5|G|9
6WDK|1|5|G|10
*
6WDK|1|5|C|25
6WDK|1|5|G|26
6WDK|1|5|U|27
*
6WDK|1|5|A|43
6WDK|1|5|A|44
6WDK|1|5|G|45
6WDK|1|5|G|46
6WDK|1|5|U|47
6WDK|1|5|C|48
6WDK|1|5|G|49
*
6WDK|1|5|C|65
6WDK|1|5|C|66
Current chains
- Chain 5
- tRNAfMet
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain 7
- Transfer RNA; tRNA
- Chain R
- 30S ribosomal protein S13
- Chain m
- 50S ribosomal protein L16
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