J4_6WDL_001

3D structure

PDB id

6WDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6WDL|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WDL_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1928

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6WDL|1|1|C|268
6WDL|1|1|C|269
*
6WDL|1|1|G|370
6WDL|1|1|A|371
6WDL|1|1|G|372
6WDL|1|1|U|373
6WDL|1|1|A|374
6WDL|1|1|G|375
*
6WDL|1|1|U|399
6WDL|1|1|G|400
6WDL|1|1|A|401
6WDL|1|1|A|402
6WDL|1|1|U|403
6WDL|1|1|A|404
6WDL|1|1|U|405
6WDL|1|1|G|406
*
6WDL|1|1|C|421
6WDL|1|1|A|422
6WDL|1|1|A|423
6WDL|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28