J4_6WDM_012
3D structure
- PDB id
- 6WDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAG*CAUAACG*CCAAAG*UGC
- Length
- 19 nucleotides
- Bulged bases
- 6WDM|1|3|C|183, 6WDM|1|3|A|197
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6WDM_012 not in the Motif Atlas
- Homologous match to J4_5J7L_002
- Geometric discrepancy: 0.181
- The information below is about J4_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_01665.1
- Basepair signature
- cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6WDM|1|3|G|142
6WDM|1|3|A|143
6WDM|1|3|G|144
*
6WDM|1|3|C|178
6WDM|1|3|A|179
6WDM|1|3|U|180
6WDM|1|3|A|181
6WDM|1|3|A|182
6WDM|1|3|C|183
6WDM|1|3|G|184
*
6WDM|1|3|C|193
6WDM|1|3|C|194
6WDM|1|3|A|195
6WDM|1|3|A|196
6WDM|1|3|A|197
6WDM|1|3|G|198
*
6WDM|1|3|U|219
6WDM|1|3|G|220
6WDM|1|3|C|221
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain Y
- 30S ribosomal protein S20
Coloring options: