J4_6WNT_008

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6WNT|1|4|U|2099

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WNT_008 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1557

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6WNT|1|4|C|1961
6WNT|1|4|U|1962
6WNT|1|4|G|1963
*
6WNT|1|4|C|2033
6WNT|1|4|G|2034
*
6WNT|1|4|C|2052
6WNT|1|4|C|2053
6WNT|1|4|U|2054
6WNT|1|4|A|2055
6WNT|1|4|A|2056
6WNT|1|4|G|2057
6WNT|1|4|G|2058
6WNT|1|4|U|2059
6WNT|1|4|A|2060
6WNT|1|4|G|2061
*
6WNT|1|4|C|2095
6WNT|1|4|G|2096
6WNT|1|4|A|2097
6WNT|1|4|A|2098
6WNT|1|4|U|2099
6WNT|1|4|G|2100

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2