J4_6WNV_004

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6WNV|1|4|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WNV_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1759

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6WNV|1|4|C|268
6WNV|1|4|C|269
*
6WNV|1|4|G|370
6WNV|1|4|A|371
6WNV|1|4|G|372
6WNV|1|4|U|373
6WNV|1|4|A|374
6WNV|1|4|G|375
*
6WNV|1|4|U|399
6WNV|1|4|G|400
6WNV|1|4|A|401
6WNV|1|4|A|402
6WNV|1|4|U|403
6WNV|1|4|A|404
6WNV|1|4|U|405
6WNV|1|4|G|406
*
6WNV|1|4|C|421
6WNV|1|4|A|422
6WNV|1|4|A|423
6WNV|1|4|G|424

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28