J4_6WNV_006
3D structure
- PDB id
- 6WNV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome without free 5S rRNA and with a perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAUAAA*UC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 6WNV|1|4|G|1399, 6WNV|1|4|A|1400, 6WNV|1|4|U|1401, 6WNV|1|4|A|1402, 6WNV|1|4|C|1774, 6WNV|1|4|U|1775
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6WNV_006 not in the Motif Atlas
- Homologous match to J4_5J7L_021
- Geometric discrepancy: 0.1221
- The information below is about J4_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6WNV|1|4|C|1398
6WNV|1|4|G|1399
6WNV|1|4|A|1400
6WNV|1|4|U|1401
6WNV|1|4|A|1402
6WNV|1|4|A|1403
6WNV|1|4|A|1404
*
6WNV|1|4|U|1422
6WNV|1|4|C|1423
*
6WNV|1|4|G|1773
6WNV|1|4|C|1774
6WNV|1|4|U|1775
6WNV|1|4|U|1776
*
6WNV|1|4|A|2137
6WNV|1|4|G|2138
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L32
- Chain n
- 50S ribosomal protein L17
- Chain s
- 50S ribosomal protein L22
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