J4_6WNV_008

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

6WNV|1|4|G|1469

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WNV_008 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0788

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6WNV|1|4|U|1441
6WNV|1|4|C|1442
*
6WNV|1|4|G|1466
6WNV|1|4|G|1467
6WNV|1|4|U|1468
6WNV|1|4|G|1469
6WNV|1|4|A|1470
6WNV|1|4|G|1471
*
6WNV|1|4|C|1532
6WNV|1|4|U|1533
*
6WNV|1|4|A|1725
6WNV|1|4|A|1726
6WNV|1|4|U|1727
6WNV|1|4|C|1728
6WNV|1|4|G|1729
6WNV|1|4|U|1730
6WNV|1|4|A|1731

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain t

50S ribosomal protein L23