J4_6WNV_011

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6WNV|1|4|U|2099

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WNV_011 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1198

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6WNV|1|4|C|1961
6WNV|1|4|U|1962
6WNV|1|4|G|1963
*
6WNV|1|4|C|2033
6WNV|1|4|G|2034
*
6WNV|1|4|C|2052
6WNV|1|4|C|2053
6WNV|1|4|U|2054
6WNV|1|4|A|2055
6WNV|1|4|A|2056
6WNV|1|4|G|2057
6WNV|1|4|G|2058
6WNV|1|4|U|2059
6WNV|1|4|A|2060
6WNV|1|4|G|2061
*
6WNV|1|4|C|2095
6WNV|1|4|G|2096
6WNV|1|4|A|2097
6WNV|1|4|A|2098
6WNV|1|4|U|2099
6WNV|1|4|G|2100

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2