J4_6WNV_013
3D structure
- PDB id
- 6WNV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome without free 5S rRNA and with a perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGGC*GAC*GGAAG*UGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6WNV_013 not in the Motif Atlas
- Homologous match to J4_5J7L_028
- Geometric discrepancy: 0.0985
- The information below is about J4_5J7L_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.4
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6WNV|1|4|G|2771
6WNV|1|4|G|2772
6WNV|1|4|G|2773
6WNV|1|4|C|2774
*
6WNV|1|4|G|2802
6WNV|1|4|A|2803
6WNV|1|4|C|2804
*
6WNV|1|4|G|2859
6WNV|1|4|G|2860
6WNV|1|4|A|2861
6WNV|1|4|A|2862
6WNV|1|4|G|2863
*
6WNV|1|4|U|2897
6WNV|1|4|G|2898
6WNV|1|4|C|2899
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain c
- 50S ribosomal protein L3
- Chain j
- 50S ribosomal protein L13
- Chain k
- 50S ribosomal protein L14
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