J4_6WNW_004

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6WNW|1|4|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WNW_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1517

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6WNW|1|4|C|268
6WNW|1|4|C|269
*
6WNW|1|4|G|370
6WNW|1|4|A|371
6WNW|1|4|G|372
6WNW|1|4|U|373
6WNW|1|4|A|374
6WNW|1|4|G|375
*
6WNW|1|4|U|399
6WNW|1|4|G|400
6WNW|1|4|A|401
6WNW|1|4|A|402
6WNW|1|4|U|403
6WNW|1|4|A|404
6WNW|1|4|U|405
6WNW|1|4|G|406
*
6WNW|1|4|C|421
6WNW|1|4|A|422
6WNW|1|4|A|423
6WNW|1|4|G|424

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28