J4_6WNW_015
3D structure
- PDB id
- 6WNW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCCUU*GAGU
- Length
- 20 nucleotides
- Bulged bases
- 6WNW|1|7|U|8, 6WNW|1|7|U|47, 6WNW|1|7|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6WNW_015 not in the Motif Atlas
- Homologous match to J4_7U2I_014
- Geometric discrepancy: 0.4107
- The information below is about J4_7U2I_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47701.1
- Basepair signature
- cWW-F-F-cWW-F-cWW-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6WNW|1|7|A|7
6WNW|1|7|U|8
6WNW|1|7|A|9
6WNW|1|7|G|10
*
6WNW|1|7|C|25
6WNW|1|7|A|26
6WNW|1|7|G|27
*
6WNW|1|7|C|43
6WNW|1|7|G|44
6WNW|1|7|U|45
6WNW|1|7|G|46
6WNW|1|7|U|47
6WNW|1|7|C|48
6WNW|1|7|C|49
6WNW|1|7|U|50
6WNW|1|7|U|51
*
6WNW|1|7|G|63
6WNW|1|7|A|64
6WNW|1|7|G|65
6WNW|1|7|U|66
Current chains
- Chain 7
- tRNAPhe
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain 4
- Large subunit ribosomal RNA; LSU rRNA
- Chain m
- 50S ribosomal protein L16
Coloring options: